Tutorials

Tutorial Last Updated Description
Server Access
UConn Health Cluster (PBS) June 2015 Understanding the UConn Health Cluster
BBC Cluster (SGE) February 2017 Understanding the BBC Cluster
UNIX and R 
Unix Basics November 2013 Introduction to Command Line Operations
VIM December 2013 Introduction to VIM UNIX Editor
Unix Examples November 2013 Basic Bioinformatic Exercises
Introduction to R November 2013 Basic Analysis and Plots
Script Writing
Writing Scripts: part 1 – Single Job April 2017 Submission Script to a Single Node (multiple processors)
Writing Scripts: part 2 – Array Job April 2017 Submission Script to Multiple Nodes (Array job with multiple processors)
RNA-Seq Guides
Prokaryote RNA-Seq (EDGE-pro/DESeq2) July 2015 EDGE-pro tutorial (with Listeria reference genome)
Model Plant RNA-Seq (STAR/DESeq2) July 2015 RNASeq tutorial (with Glycine max reference genome)
Non-Model Plant RNA-Seq (Bowtie2/eXpress/DESeq2 August 2015 RNA-Seq tutorial (with Picea rubens reference transcriptome)
Human RNA-Seq (no replicates) (STAR/DESeq2) March 2015 Introduction to RNASeq
Model Insect RNASeq (Web-based Galaxy) July 2015 Galaxy RNASeq tutorial (with Drosophila reference genome)
Genome Assembly
Genome Size Estimation Tutorial January 2017 Genome Size Estimation Tutorial
Bacterial Genome Assembly Tutorial September 2015 Genome Assembly tutorial