Commercial Software

Geneious

Geneious is a software package which allows you to use many bioinformatics software packages at a one place. It gives many features including:

  • Denovo mapping , reference mapping of your NGS data.
  • Visualization of the data and analysis
  • Sequence and chromatin analysis
  • Alignment and tree building
  • Searching using NCBI, Genbank data bases

 

We have two versions of the software available for use.

  • Standalone user version.
    • This is available as a user standalone version, and it offers lower memory (RAM).
    • User can download the software to their personal computer and use it.
    • How access the software can be found at our tutorial page

 

  • Virtual Machine Single user version.
    • This is configured as a virtual machine with 8 cpu’s and 64GB of memory (higher RAM).
    • To access the VM you will have to vpn into the CAM domain.
    • Once connected you can RDP to “einstein.cam.uchc.edu” with your CAM account.
    • Since this is a workstation, only one user can use this at a time.

To request for a Geneious account, please fill out the “CAM account request for Geneious” using the following  link

 

 

IPA (Ingenuity-Pathway-Analysis)

Qiagen’s IPA would allow you biologically interpret RNA-Seq data, analyze pathways and how to create interactive and customize pathways, it also allows you to find the most recent literature finding related to your data.

If you are interested in obtaining an account for your lab, please use the form available here.

To access IPA web version, please click on https://analysis.ingenuity.com/pa/ 

Webinars by qiagen please click here

polices: 

The maximun slot duration of single slot is 3 days.