Data Therapy Archive 2018
Data Therapy Week – 01 : RNA-Seq
Friday, January 12that 10:30 am at Engineering Science Building (ESB) 304 - Storrs CT
Data Therapy Week – 02 : RNA-Seq Discussion
Friday, January 26th at 10:30 am at Engineering Science Building (ESB) 304 - Storrs CT
Data Therapy Week – 03 : Variant Detection Discussion
Friday, February 9th at 10:30 am at Engineering Science Building (ESB) 304 - Storrs CT
Discussed the user questions and tools associated with variant detection.
e.g.: FreeBayes
Data Therapy Week – 04 : Variant Detection [WebEX Session]
Friday, March 2nd at 10:30 am at Engineering Science Building (ESB) 304 - Storrs CT
Dr. Jill L. Wegrzyn will be conducting the session, and we welcome all.
Data Therapy Week – 05 : HPC Resources and Package management [WebEX Session]
Friday, March 16th at 10:30 am at Engineering Science Building (ESB) 304 - Storrs CT
We will be discussing Xanadu cluster access and package installation (R, python)
This session is ideal for you if:
- You are new to HPC and want to know how to use HPC Resources effectively.
- Want to know how to request resources and write scripts
- Manage jobs
- How to manage and install Python and R packages
The session is also broadcast live through a WebEX link.
Data Therapy Week – 06 : General Consultation [WebEX Session]
Friday, March 30th at 10:30 am at Engineering Science Building (ESB) 304 - Storrs CT
General Consultation on computational resources and Bioinformatics solutions!
This session is ideal for you if:
- You have a question on computational resources
- Want to discuss the layout of an upcoming project
- Want help with Bioinformatics tools
- or any other general question on CBC
The session is also broadcast live through a WebEX link http://s.uconn.edu/esb304webex
CBC Open House 2018
Friday, April 27th at 8:45 am - 1.30 pm
CBC Review: Jill Wegrzyn - Assistant Professor EEB and CBC Director [slides ]
HPC Resources - Vijender Singh - Lead Bioinformatics Scientist and Associate Director [slides]
Data Therapy Week – 07 : General Consultation [WebEX Session]
Friday, May 11th at 11.00 am at Engineering Science Building (ESB) 304 - Storrs CT
General Consultation on computational resources and Bioinformatics solutions!
This session is ideal for you if:
- You have a question on computational resources
- Want to discuss the layout of an upcoming project
- Want help with Bioinformatics tools
- or any other general question on CBC
The session is also broadcast live through a WebEX link http://s.uconn.edu/esb304webex
Data Therapy Week – 08 : HPC resources with Xanadu [WebEX Session]
Friday, May 8th at 10.30 am at Engineering Science Building (ESB) 304 - Storrs CT
HPC with Xanadu
This session is ideal for you if:
- You are new to HPC and want to know how to use HPC Resources effectively.
- Want to know how to request resources and write scripts
The session is also broadcast live through a WebEX
powerpoint presentation slides :Data_Therapy_HPC_with_Xanadu_2018week08
Data Therapy Week – 09 : Introduction to RNA Seq Analysis [WebEX Session]
Friday, May 8th at 10.30 am at Engineering Science Building (ESB) 304 - Storrs CT
Introduction to RNA Seq Analysis
The session is also broadcast live through a WebEX
Data Therapy Week – 10 : Basics in Python [WebEX Session]
Friday, July 20th at 10.30 am at Engineering Science Building (ESB) 304 - Storrs CT
Basics in Python
- Variable Types in Python
- Error Types and how to handle them
The session is also broadcast live through a WebEX
Data Therapy Week – 11 : Basics in Python (Cont.) [WebEX Session]
Friday, August 3rd at 10.30 am at Engineering Science Building (ESB) 304 - Storrs CT
Python: A beginners Introduction! (Continued from Last Week)
- Variable Types
- Lists and Tupples
- How to create, access and change values in Lists and Tupples
- Introduction to loops
- while / for loops
- How to use the loops
The session is also broadcast live through a WebEX
Data Therapy Week – 12 : How to access a SAM/BAM files using Python libraries [WebEX Session]
Friday, August 17th at 10.30 am at Engineering Science Building (ESB) 304 - Storrs CT
Python: How to access a SAM/BAM files using Python
- Introduction to SAM/BAM files
- Access SAM/BAM files using python utilities
- Writing a script to access multiple data points using "for"/"while" loops
- Exercise
Download path "/UCHC/PublicShare/data_therapy/aug16_2018"
please copy the contents of "aug16_2018" to your home directory using an interactive session
cp -a /UCHC/PublicShare/data_therapy/aug16_2018 ~/
The session is also broadcast live through a WebEX
Data Therapy Week – 13 : How to access a SAM/BAM files using Python libraries [WebEX Session]
Friday, August 31 th at 10.30 am at Engineering Science Building (ESB) 304 - Storrs CT
Python: How to access a SAM/BAM files using Python, Continued
The session is also broadcast live through a WebEX
Data Therapy Week – 14 : How to access a SAM/BAM files using Python libraries [WebEX Session]
Friday, September 14 th at 10.30 am at Engineering Science Building (ESB) 304 - Storrs CT
Python: How to access a SAM/BAM files using Python, Continued
The session is also broadcast live through a WebEX
Data Therapy Week – 15 : General Consultation [WebEX Session]
Friday, September 28th at 10.30 am at Engineering Science Building (ESB) 304 - Storrs CT
The session is also broadcast live through a WebEX
Data Therapy Week – 16 : Accessing Xanadu HPC: Do’s and Don’t [WebEX Session]
Friday, October 12th at 10.30 am at Engineering Science Building (ESB) 304 - Storrs CT
The session is also broadcast live through a WebEX
power point slides: Data_Therapy_HPC_intoduction_2018week16
Data Therapy Week – 17 : Install Python Packages using conda [WebEX Session]
Friday, October 26th at 10.30 am at Engineering Science Building (ESB) 304 - Storrs CT
Installing Python packages using conda
The session is also broadcast live through a WebEX
power point slides: Data_Therapy_Python_Package_Install_Using_conda_2018week17
Data Therapy Week – 18 : General consultation [WebEX Session]
Friday, November 30th at 10.30 am at Engineering Science Building (ESB) 304 - Storrs CT
General Consultation
The session is also broadcast live through a WebEX
Data Therapy Week – 19 : RNASeq via DESeq2 [WebEX Session]
Friday, December 14th at 10.30 am at Engineering Science Building (ESB) 304 - Storrs CT
RNASeq via DESeq2 :
Please join Dr. Vijender Singh and and Wolf Eily for this discussion!
Follow the web conference link: http://s.uconn.edu/esb304webex