Data Therapy 

These sessions will be held bi-weekly on Fridays.  Join us, and the next session will be on May 19th !!! 
We welcome beginners and advanced users to generate a productive discussion! 
To get an idea of the group size (and your general interests) - we have a very quick survey
This survey will also form an independent mailing list for this event so fill this out if you want to keep updated on our meetings!

CBC Events

Data Therapy Week – 09 : TOPIC TBA

Friday, June 2nd at 10:00 am in BioPharm 203.

Data Therapy Week – 08 : Metagenomics

Friday, May 19th at 10:00 am in BioPharm 203.

- General workflow

- Resources ( 16S / Genomes / Metagenomes / Function )

- General Challengers / Considerations

- Maker Genes

- Bioinformatics workflow 

CBC_DataTherapy_Metagenomics_Week08 

Data Therapy Week – 07 : RNA-Seq

Friday, May 5th at 10:00 am in BioPharm 203.

- RNA-Seq versus Microarrays

- RNA-Seq workflow

- Designing the Study

- Paired versus Single-End

- Analysis Challenges

- One Gene: Two Isoforms: Opposite Functions

- Quality Control

- Read Mapping or Assembly

- Generating Raw Reads

- Differential Expression

CBC_DataTherapy_RNASeq_Week07

Data Therapy Week – 06 : Introduction to HPC Resources

Friday, April 21st at 10:00 am in BioPharm 203.

- BBC cluster and it's different nodes

How to open a graphical terminal to display (pdf and image files)

- In the cluster working directory (or in Home directory), using a terminal type: python -m SimpleHTTPServer
- In a new terminal using your PC/lap-top run: ssh -NL 8000:localhost:8000 <user_name>@bbcsrv3.biotech.uconn.edu  , and leave the terminal window open.
- Then open a browser window on your computer and type: http://localhost:8000 to see your working directory and to open pdf and image files to view.

- How to submit a single job and a array job using qsub

- Data transfering

Data Therapy Week – 05 : ChIP-Seq

Friday, April 7th at 10:00 am in BioPharm 203.

DataTherapy_ChipSeq_Week05

Data Therapy Week – 04 : RADSeq

Friday, March 24th at 10:00 am in BioPharm 203.

DataTherapy_Week04

Data Therapy Week – 03 : Genome Assembly

Friday March 3rd at 10.00 am in BioPharm 203
Discussed ideal sequencing strategies for de-novo genome assembly of  Non-model species.

Discussed genome assembly tools/softwares e.g.: MaSuRCA, Allpaths, SOAPdenovo2, SPAdes

What type of sequencing data is better when you are doing a population studies?

How to go about doing assembly when you have RAD-seq data.

CBC Open House 2017

Friday, 24th of February at  Grossman Auditorium, Cell and Genome Science Building, UConn Health Center.  [schedule]

Data Therapy Week – 02 : Discussion on Databases

 Friday, Feb. 17th at 10:00am in BioPharm 203.

Data Therapy Week – 01 : Introduction to the CBC and the resources

Feb 3rd 2017
DataTherapy_Week01

Next Session

June 2nd 2017

10 am @ BioPharm 203

Topic: TBA

 

Online Support

Connect to the CBC team through #bioinformatics_help channel at
uconn-cbc.slack.com