ISG CBC Rates

Bioinformatics Services Offered Through CBC

The CBC is accepting new projects for 2019/2020. The current rate plan is current, as of September 2019.  

The rates posted reflect standard informatic analysis.  It is very common for analysis to require additional steps or applications that are outside of the standard toolbox.  In those cases, we can provide quotes on a case by case basis.
Consultations, advice, server accounts, and data storage remain free services provided by the CBC.  Should you require direct assistance with scripting or data analysis, we can provide a free estimate to you based on your project requirements.  Projects will be accepted on a first come, first serve basis.  Estimates on the timeline for completion will be made available at the time the quotation is generated and the data is available for analysis.
To request a quote for your project, please provide a brief description here.
Services provided by the CBC:
  • NCBI/Ensembl Data Submission
  • Web or Application Hosting Configuration at UCH
  • Data Acquisition/Storage
  • Genome Assembly
  • RNA-seq analysis
  • ChIP-Seq Analysis
  • Other Services Available

Download the pdf version [here]

A template of the report that will be provided at the end of analysis can be found [here]

NOTE: For external customers (Research labs outside UConn), there will be a 35% surcharge over the listed price.  

              Get a 10% discount  when you combine data analytics with CGI sequencing services

 

RNA-seq analysis
Number of Libraries [Case-Control study design] ?? <10 Libraries ?? 11-20 Libraries 21-30 libraries > 31 libraries
mRNA-seq (Reference Available) ?? $ 2095.75 $ 3143.63 $ 4191.51 $1047.88 per additional 10 libraries
Non-Coding RNA (miRNA, ncRNA etc) $ 2494.94 $ 3742.41 $ 6111.81 $1247.48 per additional 10 libraries
No Reference (Building reference de-novo, each library is assembled independently) $ 4191.50 $ 6287.24  $ 9787.14 $ 3499.90 per additional 10 libraries
de-novo Reference annotation Hourly rates of 82.93/hr applicable
 For complex experimental  design or time-course study please get in touch:  cbcsupport@uconn.edu

Timeline: Typical turnaround time is 2-4weeks for a case control study.  For more complex designs, timeline will be provided at the time of discussion.

 

ChIP-seq analysis
Number of Libraries ?? <10 Libraries 11-20 Libraries 21-30 libraries > 31 libraries
Reference Available $ 4517.61 $ 6023.48 $ 9035.23 Hourly rates of 82.93/hr applicable
 For complex experimental  design or time-course study please get in touch:  cbcsupport@uconn.edu

Timeline: Typical turnaround time is 4-6 weeks for a simple study.  For more complex designs, timeline will be provided at the time of discussion.

 

Genome Assembly
<10 Libraries ??
Eukaryotic (Without gene annotation) (per genome) $ 6399.96
Eukaryotic (With gene annotation) (per genome) Hourly rates of 82.93/hr applicable
Prokaryotic Genome assembly without annotation $ 1129.40
Prokaryotic Genome assembly with basic annotation $ 1505.87
Prokaryotic Genome assembly with advanced annotation $ 3011.75
Prokaryotic Genome assembly with comparative annotation Hourly rates of 82.93/hr applicable
Timeline: Turnaround time will depend on genome size, sample complexity and other factors. A plausible timeline will be given at the time of project discussion.

 

NCBI/Ensembl Data submission
Number of Libraries ?? <10 Libraries 11-30 Libraries 31-40 libraries > 41 libraries
Raw reads (NCBI SRA) $ 179.05 $ 223.80 $ 268.56 Hourly rates of 82.93/hr applicable
Genome assembly (NCBI WGS) No annotation $ 268.56 Hourly rates of 82.93/hr applicable
Transcriptome assembly (NCBI TSA) No annotation $ 268.56 $ 6287.24  $ 9787.14
SNP (NCBI dbSNP or Ensembl $ 895.21 Hourly rates of 82.93/hr applicable
TimelineTurnaround time is around 1-2weeks depending on data size.

 

Data Acquisition/Storage (cost per library) from CGI, MARs, or External Source (with or without quality control of Illumina data)
Number of Libraries [Case-Control study design] ?? <10 Libraries 11-30 Libraries 31-40 libraries > 41 libraries
Including quality control (FastQC and MultiQC) $ 134.28 $ 179.05 $ 223.80 Hourly rates of 82.93/hr applicable
Without quality control $ 89.52 $ 134.28 $ 179.05
TimelineTurnaround time is around 1 week depending on data size.

 

Web or Application Hosting Configuration at UCH
Configuration of web host including DNA $ 1342.81
TimelineTimeline will be provided at the time of discussion

 

Other Services offered through CBC (Hourly rates of 82.93/hr apply)
Estimates will be provided in advance based on experimental design, scale and complexity
per hour
RAD-seq Analysis $ 82.93
SNP detection and annotation $ 82.93
Microarray Analysis $ 82.93
Association genetics $ 82.93
Pathway analysis $ 82.93
Single cell transcriptome $ 82.93
Proteomics $ 82.93
Data Visualization $ 82.93
Timeline: Turnaround time is will depend on study type and data complexity.  A plausible timeline will be provided at the time of discussion.