Bioinformatics Services Offered Through CBC
The CBC is accepting new projects for 2019/2020. The current rate plan is current, as of September 2019.
The rates posted reflect standard informatic analysis. It is very common for analysis to require additional steps or applications that are outside of the standard toolbox. In those cases, we can provide quotes on a case by case basis.
Consultations, advice, server accounts, and data storage remain free services provided by the CBC. Should you require direct assistance with scripting or data analysis, we can provide a free estimate to you based on your project requirements. Projects will be accepted on a first come, first serve basis. Estimates on the timeline for completion will be made available at the time the quotation is generated and the data is available for analysis.
To request a quote for your project, please provide a brief description here.
Services provided by the CBC:
- NCBI/Ensembl Data Submission
- Web or Application Hosting Configuration at UCH
- Data Acquisition/Storage
- Genome Assembly
- RNA-seq analysis
- ChIP-Seq Analysis
- Other Services Available
Download the pdf version [here]
A template of the report that will be provided at the end of analysis can be found [here]
NOTE: For external customers (Research labs outside UConn), there will be a 35% surcharge over the listed price.
Get a 10% discount when you combine data analytics with CGI sequencing services
| RNA-seq analysis | ||||
| Number of Libraries [Case-Control study design] ?? | <10 Libraries ?? | 11-20 Libraries | 21-30 libraries | > 31 libraries |
| mRNA-seq (Reference Available) ?? | $ 2095.75 | $ 3143.63 | $ 4191.51 | $1047.88 per additional 10 libraries |
| Non-Coding RNA (miRNA, ncRNA etc) | $ 2494.94 | $ 3742.41 | $ 6111.81 | $1247.48 per additional 10 libraries |
| No Reference (Building reference de-novo, each library is assembled independently) | $ 4191.50 | $ 6287.24 | $ 9787.14 | $ 3499.90 per additional 10 libraries |
| de-novo Reference annotation | Hourly rates of 82.93/hr applicable | |||
For complex experimental design or time-course study please get in touch: cbcsupport@uconn.eduTimeline: Typical turnaround time is 2-4weeks for a case control study. For more complex designs, timeline will be provided at the time of discussion. |
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| ChIP-seq analysis | ||||
| Number of Libraries ?? | <10 Libraries | 11-20 Libraries | 21-30 libraries | > 31 libraries |
| Reference Available | $ 4517.61 | $ 6023.48 | $ 9035.23 | Hourly rates of 82.93/hr applicable |
For complex experimental design or time-course study please get in touch: cbcsupport@uconn.eduTimeline: Typical turnaround time is 4-6 weeks for a simple study. For more complex designs, timeline will be provided at the time of discussion. |
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| Genome Assembly | ||||
| <10 Libraries ?? | ||||
| Eukaryotic (Without gene annotation) (per genome) | $ 6399.96 | |||
| Eukaryotic (With gene annotation) (per genome) | Hourly rates of 82.93/hr applicable | |||
| Prokaryotic Genome assembly without annotation | $ 1129.40 | |||
| Prokaryotic Genome assembly with basic annotation | $ 1505.87 | |||
| Prokaryotic Genome assembly with advanced annotation | $ 3011.75 | |||
| Prokaryotic Genome assembly with comparative annotation | Hourly rates of 82.93/hr applicable | |||
| Timeline: Turnaround time will depend on genome size, sample complexity and other factors. A plausible timeline will be given at the time of project discussion. | ||||
| NCBI/Ensembl Data submission | ||||
| Number of Libraries ?? | <10 Libraries | 11-30 Libraries | 31-40 libraries | > 41 libraries |
| Raw reads (NCBI SRA) | $ 179.05 | $ 223.80 | $ 268.56 | Hourly rates of 82.93/hr applicable |
| Genome assembly (NCBI WGS) No annotation | $ 268.56 | Hourly rates of 82.93/hr applicable | ||
| Transcriptome assembly (NCBI TSA) No annotation | $ 268.56 | $ 6287.24 | $ 9787.14 | |
| SNP (NCBI dbSNP or Ensembl | $ 895.21 | Hourly rates of 82.93/hr applicable | ||
| Timeline: Turnaround time is around 1-2weeks depending on data size. | ||||
| Data Acquisition/Storage (cost per library) from CGI, MARs, or External Source (with or without quality control of Illumina data) | ||||
| Number of Libraries [Case-Control study design] ?? | <10 Libraries | 11-30 Libraries | 31-40 libraries | > 41 libraries |
| Including quality control (FastQC and MultiQC) | $ 134.28 | $ 179.05 | $ 223.80 | Hourly rates of 82.93/hr applicable |
| Without quality control | $ 89.52 | $ 134.28 | $ 179.05 | |
| Timeline: Turnaround time is around 1 week depending on data size. | ||||
| Web or Application Hosting Configuration at UCH | ||||
| Configuration of web host including DNA | $ 1342.81 | |||
| Timeline: Timeline will be provided at the time of discussion | ||||
| Other Services offered through CBC (Hourly rates of 82.93/hr apply) | ||||
| Estimates will be provided in advance based on experimental design, scale and complexity | ||||
| per hour | ||||
| RAD-seq Analysis | $ 82.93 | |||
| SNP detection and annotation | $ 82.93 | |||
| Microarray Analysis | $ 82.93 | |||
| Association genetics | $ 82.93 | |||
| Pathway analysis | $ 82.93 | |||
| Single cell transcriptome | $ 82.93 | |||
| Proteomics | $ 82.93 | |||
| Data Visualization | $ 82.93 | |||
| Timeline: Turnaround time is will depend on study type and data complexity. A plausible timeline will be provided at the time of discussion. | ||||