CBC and CGI Workshop Registration
ISG CBC Workshop Schedule - 2024
Workshop: Virtual Genome Assembly
Dates: July 15-18, 2024 (4days)
Time: 10.00am - 1.00pm
Location: Online
Cost: $400 (UConn affiliates including UConn Health)
$500 (External Participants)
Register
Virtual Genome Assembly Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux, HPC, High Throughput Sequencing
Day 2: Assembly strategies, quality control of data, contaminant detection
Day 3: Short Read and Hybrid Assembly
Day 4: Long Read Assembly, Evaluation
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in Genome Assembly methods. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $500 and $400 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@helpspotmail.com
Past Workshops
Workshop: Virtual SingleCell RNASeq
Dates: June 10-13, 2024 (4days)
Time: 10.00am - 1.00pm
Location: Online
Cost: $400 (UConn affiliates including UConn Health)
$500 (External Participants)
Virtual SingleCell RNASeq Workshop :: (Click here to expand)
Workshop schedule
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in Single Cell RNA-seq experiments/analyses. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $500 and $400 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on zoom, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@helpspotmail.com
Workshop: Virtual Chip-seq and ATAC-seq Data Analysis
Dates: April 22-25, 2024 (4days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $400 (UConn affiliates including UConn Health)
$500 (External Participants)
Virtual SingleCell RNASeq Workshop :: (Click here to expand)
Workshop schedule
Discover the Dynamics of DNA-Protein Interactions and Chromatin Accessibility: Join Our ChIP-seq and ATAC-seq Data Analysis
Workshop Elevate your research and uncover the secrets of the genome with our hands-on workshop on ChIP-seq and ATAC-seq data analysis. Designed for researchers, bioinformaticians, and anyone passionate about genomic science, this workshop will guide you through the intricacies of analyzing chromatin immunoprecipitation sequencing (ChIP-seq) and Assay for Transposase-Accessible Chromatin sequencing (ATAC-seq) data.
Workshop FAQ
Who should attend?
Anyone with keen interest in Chip or ATAC-seq experiments/analyses. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $500 and $400 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on zoom, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@helpspotmail.com
Workshop: Virtual RAD-seq
Dates: March 18-21, 2024
Time: 9.00am - 12.00pm
Location: Online
Cost: $400 (UConn affiliates including UConn Health)
$500 (External Participants)
Virtual RAD-seq Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux and high performance computing.
Day 2-4:
The workshop will cover basic concepts and walk through a complete analysis on a high performance computing cluster. The analysis will start with raw reads and go through some very basic analyses of population genetic structure. The core learning goal is to familiarize attendees with the steps necessary to analyze RAD-seq data, the tools available, common data formats, and possible pitfalls they may encounter. The short duration of the workshop means that nearly all the time will be given to explaining the rationale and mechanics of each stage of the analysis, and not to independent exercises.
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in RAD-seq. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop. WE RECOMMEND PARTICIPANTS TO HAVE 2 DISPLAY UNITS (MONITORS), THIS WILL HELP YOU TO FOLLOW THE INSTRUCTOR ON ONE AND WILL LET YOU CARRY OUT THE EXERCISE ON THE OTHER. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $500 and $400 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@helpspotmail.com
Workshop: Virtual RNA-seq Data Analysis with Reference Genome and Annotation
Dates: February 20-23, 2024 (4 days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $400 (UConn affiliates including UConn Health)
$500 (External Participants)
Virtual RNA-seq with Reference Genome Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux and high performance computing.
Day 2-4:
This workshop will focus on experimental design, high throughput sequencing basics, quality control, alignment to a reference genome, differential expression analysis, and functional annotation. Tools presented are appropriate for researchers working in systems with a reference genome.
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in RNA-seq. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop. WE RECOMMEND PARTICIPANTS TO HAVE 2 DISPLAY UNITS (MONITORS), THIS WILL HELP YOU TO FOLLOW THE INSTRUCTOR ON ONE AND WILL LET YOU CARRY OUT THE EXERCISE ON THE OTHER. We will send you details of softwares and installation instructions.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $500 and $400 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on zoom, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@helpspotmail.com
Workshop: Virtual Genome Annotation
Dates: January 22-25, 2024 (4days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $400 (UConn affiliates including UConn Health)
$500 (External Participants)
Register
Virtual Genome Annotation Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux and high performance computing.
Day 2: Introduction to HTS, Genome Assembly Validation, File Format Basics, and Repeats
Day 3: Helixer annotation with no evidence, BRAKER annotation with protein evidence
Day 4: EASEL with RNA-seq evidence and annotation evaluation
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in genome annotation. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $483 and $350 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@helpspotmail.com
Workshop: Virtual SingleCell RNASeq
Dates: December 12-15, 2023 (4days)
Time: 9.00am - 12.30pm
Location: Online
Cost: $400 (UConn affiliates including UConn Health)
$500 (External Participants)
Virtual SingleCell RNASeq Workshop :: (Click here to expand)
Workshop schedule
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in Single Cell RNA-seq experiments/analyses. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $500 and $400 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on zoom, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@helpspotmail.com
Workshop: Virtual R Workshop
Dates: Friday Weekly starting October 20th (~12 weeks)
Time: 9.00am - 10.00am or 3.00pm - 4.00am pm
Location: Online
Cost: $250
Virtual R Workshop :: (Click here to expand)
This will be for ~10 weeks with new topic discussed every week
Payment: Please click this link for payment
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu
Workshop: Virtual de novo RNA-seq Data Analysis (non-model)
Dates: November 13-16, 2023 (4 days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $400 (UConn affiliates including UConn Health)
$500 (External Participants)
Register
Virtual RNA-seq (Non-model) Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux and high performance computing.
Day 2-4:
Introduction to Linux, high performance computing, high-throughput sequencing, and RNA-seq experimental design. Data Analysis: raw reads (fastq), read quality control, transcriptome assembly, filtering contigs and clustering, EnTAP annotation, Kallisto Indexing and feature quantification, introduction to R, DE analysis and visualization (DESeq2) GoAnalysis, Q&A.
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in transcriptomics and RNA-seq. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop. WE RECOMMEND PARTICIPANTS TO HAVE 2 DISPLAY UNITS (MONITORS), THIS WILL HELP YOU TO FOLLOW THE INSTRUCTOR ON ONE AND WILL LET YOU CARRY OUT THE EXERCISE ON THE OTHER. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $500 and $400 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on zoom, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu
Workshop: Virtual Variant Detection
Dates: October 23-26, 2023 (4 days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $400 (UConn affiliates including UConn Health)
$500(External Participants)
Virtual Variant Detection Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux, HPC, HTS, and experimental design for variant detection.
Day 2-4 :
Introduction, reference genome preparation, download and QC of sequence data, sequence alignment, QC and post-processing, variant detection using freebayes, GATK and bcftools, filtering and comparing variant sets, functional annotation, visualization.
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest and desire to develop variant detection analytic skills. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $500 for external and $400 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on zoom, and will run from 9:00am to 12:00pm on the dates indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu
Workshop: Virtual RNA-seq Data Analysis with Reference Genome and Annotation
Dates: October 2-5, 2023 (4 days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $400 (UConn affiliates including UConn Health)
$500 (External Participants)
Registration Closed link
Virtual RNA-seq with Reference Genome Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux and high performance computing.
Day 2-4:
This workshop will focus on experimental design, high throughput sequencing basics, quality control, alignment to a reference genome, differential expression analysis, and functional annotation. Tools presented are appropriate for researchers working in systems with a reference genome.
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in RNA-seq. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop. WE RECOMMEND PARTICIPANTS TO HAVE 2 DISPLAY UNITS (MONITORS), THIS WILL HELP YOU TO FOLLOW THE INSTRUCTOR ON ONE AND WILL LET YOU CARRY OUT THE EXERCISE ON THE OTHER. We will send you details of softwares and installation instructions.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $500 and $400 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on zoom, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu
Workshop: Virtual SingleCell RNASeq
Dates: August 21-24, 2023 (4days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $400 (UConn affiliates including UConn Health)
$500 (External Participants)
Registration Closed link
Virtual SingleCell RNASeq Workshop :: (Click here to expand)
Workshop schedule
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in Single Cell RNA-seq experiments/analyses. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $500 and $400 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on zoom, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu
Workshop: Virtual RAD-seq
Dates: August 7-10, 2023
Time: 9.00am - 12.00pm
Location: Online
Cost: $400 (UConn affiliates including UConn Health)
$500 (External Participants)
Registration Closed link
Virtual RAD-seq Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux and high performance computing.
Day 2-4:
The workshop will cover basic concepts and walk through a complete analysis on a high performance computing cluster. The analysis will start with raw reads and go through some very basic analyses of population genetic structure. The core learning goal is to familiarize attendees with the steps necessary to analyze RAD-seq data, the tools available, common data formats, and possible pitfalls they may encounter. The short duration of the workshop means that nearly all the time will be given to explaining the rationale and mechanics of each stage of the analysis, and not to independent exercises.
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in RAD-seq. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop. WE RECOMMEND PARTICIPANTS TO HAVE 2 DISPLAY UNITS (MONITORS), THIS WILL HELP YOU TO FOLLOW THE INSTRUCTOR ON ONE AND WILL LET YOU CARRY OUT THE EXERCISE ON THE OTHER. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $500 and $400 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu
Workshop: Virtual Genome Assembly
Dates: July 17-20, 2023 (4days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $400 (UConn affiliates including UConn Health)
$500 (External Participants)
Registration Closed link
Virtual Genome Assembly Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux, HPC, High Throughput Sequencing
Day 2: Assembly strategies, quality control of data, contaminant detection
Day 3: Short Read and Hybrid Assembly
Day 4: Long Read Assembly, Evaluation
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in Genome Assembly methods. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $500 and $400 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu
Workshop: Virtual Genome Annotation
Dates: June 12-15, 2023 (4days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $350 (UConn affiliates including UConn Health)
$483 (External Participants)
Registration Closed link
Virtual Genome Annotation Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux and high performance computing.
Day 2: Introduction to HTS, Genome Assembly Validation, File Format Basics, and Repeats
Day 3: Helixer annotation with no evidence, BRAKER annotation with protein evidence
Day 4: EASEL with RNA-seq evidence and annotation evaluation
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in genome annotation. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $483 and $350 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu
Workshop: Virtual Genome Annotation
Dates: June 12-15, 2023 (4days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $350 (UConn affiliates including UConn Health)
$483 (External Participants)
Registration Closed link
Virtual Genome Annotation Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux and high performance computing.
Day 2: Introduction to HTS, Genome Assembly Validation, File Format Basics, and Repeats
Day 3: Helixer annotation with no evidence, BRAKER annotation with protein evidence
Day 4: EASEL with RNA-seq evidence and annotation evaluation
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in genome annotation. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $483 and $350 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu
Workshop: Virtual Single Cell RNA-seq
Dates: March 20-23, 2023 (4days)
Time: 9.00am - 1.00pm
Location: Virtual
Cost: $350 (UConn affiliates including UConn Health)
$483 (External Participants)
Registration Closed link
Virtual Single Cell RNA-seq Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux and high performance computing.
Day 2-4:
Understanding the Considerations while designing single-cell RNA-seq experiment
Hands on steps to convert raw single-cell RNA-seq data to a count or expression matrix
Compute and assess QC of the datasets
Clustering of Cells (UMAP, tSNE) and identify cluster specific markers and annotating cell types.
Perform integration of different sample conditions.
Perform trajectory analysis in cell differentiation.
Registration
Registration Link
Workshop FAQ
Who should attend?
Anyone with keen interest in Single Cell RNA-seq. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $483 and $350 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held virtually over Zoom, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu
Workshop: Virtual (Non-model) RNA-seq Data Analysis
Dates: February 13-16, 2023 (4 days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $350 (UConn affiliates including UConn Health)
$483 (External Participants)
Registration Closed link
Virtual RNA-seq (Non-model) Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux and high performance computing.
Day 2-4:
Introduction to Linux, high performance computing, high-throughput sequencing, and RNA-seq experimental design. Data Analysis: raw reads (fastq), read quality control, transcriptome assembly, filtering contigs and clustering, EnTAP annotation, Kallisto Indexing and feature quantification, introduction to R, DE analysis and visualization (DESeq2) GoAnalysis, Q&A.
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in transcriptomics and RNA-seq. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop. WE RECOMMEND PARTICIPANTS TO HAVE 2 DISPLAY UNITS (MONITORS), THIS WILL HELP YOU TO FOLLOW THE INSTRUCTOR ON ONE AND WILL LET YOU CARRY OUT THE EXERCISE ON THE OTHER. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $483 and $350 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu
Workshop: Virtual RNA-seq (Model) Data Analysis
Dates: January 9-12, 2023 (4 days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $350 (UConn affiliates including UConn Health)
$483 (External Participants)
Registration Closed link
Virtual RNA-seq Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux and high performance computing.
Day 2-4:
This workshop will focus on experimental design, high throughput sequencing basics, quality control, alignment to a reference genome, differential expression analysis, and functional annotation. Tools presented are appropriate for researchers working in systems with a reference genome.
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in RNA-seq. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop. WE RECOMMEND PARTICIPANTS TO HAVE 2 DISPLAY UNITS (MONITORS), THIS WILL HELP YOU TO FOLLOW THE INSTRUCTOR ON ONE AND WILL LET YOU CARRY OUT THE EXERCISE ON THE OTHER. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $483 and $350 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu
Workshop: Virtual Genome Assembly
Dates: May 16-19, 2022 (4days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $350 (UConn affiliates including UConn Health)
$483 (External Participants)
Registration Closed link
Virtual Genome Assembly Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux, HPC, HTS
Day 2-4 : Introduction to k-mer plots, high throughput sequencing, quality control of sequence data, contaminant detection, Genome assembly strategies and short-read assembly, Long-read and hybrid assembly, post-processing, assembly benchmarking
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in Genome Assembly methods. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $483 and $350 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu
Workshop: Virtual RAD-seq
Dates: June 6-9, 2022(4days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $350 (UConn affiliates including UConn Health)
$483 (External Participants)
Registration Closed link
Virtual RAD-seq Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux and high performance computing.
Day 2-4:
The workshop will cover basic concepts and walk through a complete analysis on a high performance computing cluster. The analysis will start with raw reads and go through some very basic analyses of population genetic structure. The core learning goal is to familiarize attendees with the steps necessary to analyze RAD-seq data, the tools available, common data formats, and possible pitfalls they may encounter. The short duration of the workshop means that nearly all the time will be given to explaining the rationale and mechanics of each stage of the analysis, and not to independent exercises.
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest in RAD-seq. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop. WE RECOMMEND PARTICIPANTS TO HAVE 2 DISPLAY UNITS (MONITORS), THIS WILL HELP YOU TO FOLLOW THE INSTRUCTOR ON ONE AND WILL LET YOU CARRY OUT THE EXERCISE ON THE OTHER. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $483 and $350 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu
Workshop: Virtual Variant Detection
Dates: July 25-28, 2022 (4 days)
Time: 9.00am - 12.00pm
Location: Online
Cost: $350 (UConn affiliates including UConn Health)
$485 (External Participants)
Registration Closed link
Virtual Variant Detection Workshop :: (Click here to expand)
Workshop schedule
Day 1: Introduction to Linux, HPC, HTS, and experimental design for variant detection.
Day 2-4 :
Introduction, reference genome preparation, download and QC of sequence data, sequence alignment, QC and post-processing, variant detection using freebayes, GATK and bcftools, filtering and comparing variant sets, functional annotation, visualization.
Registration
Workshop FAQ
Who should attend?
Anyone with keen interest and desire to develop variant detection analytic skills. Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.
What are the prerequisites?
Prior bioinformatic experience is not required. We have dedicated the first day of workshop to the basics of Linux and high performance computing.
What do I need?
You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications. We will send you details of softwares and installation instructions with your registration acknowledgement email.
Can I bring my own data?
We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost?
The registration fee is $475 for external and $350 for UConn affiliates. It is payable at the time of registration with credit card or KFS.
Where is the workshop?
It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.
How do I apply?
All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.
Questions?
If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu