CBC and CGI Workshop Registration

ISG CBC Workshop Schedule - 2020

Workshop: Variant Detection

Dates:   September 14 - 17 (4 days) 

Time: 9.00am - 12.00pm 

Location: Online

Cost: $300

Registration Open

Virtual Variant Detection Workshop :: (Click here to expand)

Workshop schedule

Day 1: Introduction to Linux, HPC

Day 2-4 : Introduction, Reference genome prep , download data, QC and trimming of data, align and compress, Sort, mark duplicates, index, Understanding SAM files, Freebayes, GATK, Understanding VCF files, hard filters, comparing variant sets, snpEFF annotation, IGV

 


Registration

Registration Link

 


Workshop FAQ

Who should attend?

Anyone with keen interest and desire to develop variant detection analytic skills.  Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.

What are the prerequisites?

Prior bioinformatic experience is not required.  We have dedicated the first day of workshop to the basics of Linux and high performance computing.

What do I need?

You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications.  We will send you details of softwares and installation instructions with your registration acknowledgement email.

Can I bring my own data?

We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.

How much does it cost?

The registration fee is $300. It is payable at the time of registration with credit card or KFS.

Where is the workshop?

It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.

How do I apply?

All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.

Questions?

If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu

Workshop: Virtual HPC Introduction 

Dates: October 5th (1 day) 

Time: 9.00am - 12.00pm 

Location: Online

Cost: $50

Registration Open

Virtual HPC Introduction Workshop :: (Click here to expand)

Workshop schedule

Day 1: Introduction to Linux and HPC

 

 


Registration

Registration Link (Card Payment)

 


Workshop FAQ

Who should attend?

Anyone who is new to Linux programming and "High Performance Computing (HPC)" with keen interest in using Xanadu computational resources in their analysis. This workshop is aimed to train new and existing novice users. The workshop will start with hands on training of Linux and then the participants will be introduced with HPC concepts and will be trained to run interactive sessions, job submission (Batch and Array), job monitoring Running R and python sessions etc

What are the prerequisites?

Prior experience is not required.

What do I need?

You will need your own laptop to use.

How much does it cost?

The registration fee is $50. It is payable at the time of registration with credit card.

Where is the workshop?

It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.

How do I apply?

All registration is "first-come, first-served." There is no application process. Sign up as soon as possible to ensure your place in the workshop.

Questions?

If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu

Workshop: Virtual RNA-Seq (Model)

Dates:   October 19th-22nd (4 days) 

Time: 9.00am - 12.00pm 

Location: Online

Cost: $300

 

Registration Open

Virtual RNA-Seq (Model) Workshop :: (Click here to expand)

Workshop schedule

Day 1: Introduction to Linux, HPC, HTS, and RNA-Seq experimental design

Day 2-4 : Model-based RNA-Seq (reference genome).  Tools: HISAT2/DESeq2/BioMART

 

 


Registration

Registration Link

 


Workshop FAQ

Who should attend?

Anyone with keen interest and desire to develop RNA-Seq analytic skills.  Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.

What are the prerequisites?

Prior bioinformatic experience is not required.  We have dedicated the first day of workshop to the basics of Linux and high performance computing.

What do I need?

You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications.  We will send you details of softwares and installation instructions with your registration acknowledgement email.

Can I bring my own data?

We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.

How much does it cost?

The registration fee is $300. It is payable at the time of registration with credit card.

Where is the workshop?

It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.

How do I apply?

All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.

Questions?

If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu

Workshop: Virtual RNA-Seq (Non-model)

Dates: November 2nd-5th (4days) 

Time: 9.00am - 12.00pm 

Location: Online

Cost: $300

Registration Open

Virtual RNA-Seq (Non-Model) Workshop :: (Click here to expand)

Workshop schedule

Day 1: Introduction to Linux, HPC, HTS, and RNA-Seq experimental design

Day 2-4 : Non-Model RNA-Seq (de novo transcriptome) Tools: Trimmommatic/Trinity/Transdecoder/Kallisto/GFOLD/NOISeq/EnTAP

 


Registration

Registration Link

 


Workshop FAQ

Who should attend?

Anyone with keen interest and desire to develop RNA-Seq analytic skills.  Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.

What are the prerequisites?

Prior bioinformatic experience is not required.  We have dedicated the first day of workshop to the basics of Linux and high performance computing.

What do I need?

You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications.  We will send you details of softwares and installation instructions with your registration acknowledgement email.

Can I bring my own data?

We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.

How much does it cost?

The registration fee is $300. It is payable at the time of registration with credit card or KFS.

Where is the workshop?

It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.

How do I apply?

All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.

Questions?

If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu

Workshop: Virtual HPC Introduction 

Dates:   August 17th (1 day) 

Time: 9.00am - 12.00pm 

Location: Online

Cost: $50

Registration Closed

Virtual HPC Introduction Workshop :: (Click here to expand)

Workshop schedule

Day 1: Introduction to Linux and HPC

 

 


Registration

Registration Link (Card Payment)

 


Workshop FAQ

Who should attend?

Anyone who is new to Linux programming and "High Performance Computing (HPC)" with keen interest in using Xanadu computational resources in their analysis. This workshop is aimed to train new and existing novice users. The workshop will start with hands on training of Linux and then the participants will be introduced with HPC concepts and will be trained to run interactive sessions, job submission (Batch and Array), job monitoring Running R and python sessions etc

What are the prerequisites?

Prior experience is not required.

What do I need?

You will need your own laptop to use.

How much does it cost?

The registration fee is $50. It is payable at the time of registration with credit card.

Where is the workshop?

It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.

How do I apply?

All registration is "first-come, first-served." There is no application process. Sign up as soon as possible to ensure your place in the workshop.

Questions?

If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu

Workshop: Virtual RNA-Seq (Non-model)

Dates: August 3rd - 6th (4days) 

Time: 9.00am - 12.00pm 

Location: Online

Cost: $300

Registration Closed

Virtual RNA-Seq (Non-Model) Workshop :: (Click here to expand)

Workshop schedule

Day 1: Introduction to Linux, HPC, HTS, and RNA-Seq experimental design

Day 2-4 : Non-Model RNA-Seq (de novo transcriptome) Tools: Trimmommatic/Trinity/Transdecoder/Kallisto/GFOLD/NOISeq/EnTAP

 


Registration

Registration Link

 


Workshop FAQ

Who should attend?

Anyone with keen interest and desire to develop RNA-Seq analytic skills.  Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.

What are the prerequisites?

Prior bioinformatic experience is not required.  We have dedicated the first day of workshop to the basics of Linux and high performance computing.

What do I need?

You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications.  We will send you details of softwares and installation instructions with your registration acknowledgement email.

Can I bring my own data?

We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.

How much does it cost?

The registration fee is $300. It is payable at the time of registration with credit card or KFS.

Where is the workshop?

It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.

How do I apply?

All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.

Questions?

If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu

Workshop: Virtual RNA-Seq (Model)

Dates:   July 13th- 16th (4 days) 

Time: 9.00am - 12.00pm 

Location: Online

Cost: $300

 

Registration Closed

Virtual RNA-Seq (Model) Workshop :: (Click here to expand)

Workshop schedule

Day 1: Introduction to Linux, HPC, HTS, and RNA-Seq experimental design

Day 2-4 : Model-based RNA-Seq (reference genome).  Tools: HISAT2/DESeq2/BioMART

 

 


Registration

Registration Link

 


Workshop FAQ

Who should attend?

Anyone with keen interest and desire to develop RNA-Seq analytic skills.  Prior course participants have included faculty, post docs, grad students, advanced undergraduates, staff, and industry researchers.

What are the prerequisites?

Prior bioinformatic experience is not required.  We have dedicated the first day of workshop to the basics of Linux and high performance computing.

What do I need?

You will need your own laptop to use, have a recent version of R, RStudio installed, and some other applications.  We will send you details of softwares and installation instructions with your registration acknowledgement email.

Can I bring my own data?

We will provide experimental datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.

How much does it cost?

The registration fee is $300. It is payable at the time of registration with credit card.

Where is the workshop?

It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.

How do I apply?

All registration is “first-come, first-served.” There is no application process. Sign up as soon as possible to ensure your place in the workshop.

Questions?

If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu

Workshop: Virtual HPC Introduction 

Dates:   July 6th (1 day) 

Time: 9.00am - 12.00pm 

Location: Online

Cost: $50

Registration Closed

Virtual HPC Introduction Workshop :: (Click here to expand)

Workshop schedule

Day 1: Introduction to Linux and HPC

 

 


Registration

Registration Link (Card Payment)

Registration Link (KFS/Grant Account Payment)


Workshop FAQ

Who should attend?

Anyone who is new to Linux programming and "High Performance Computing (HPC)" with keen interest in using Xanadu computational resources in their analysis. This workshop is aimed to train new and existing novice users. The workshop will start with hands on training of Linux and then the participants will be introduced with HPC concepts and will be trained to run interactive sessions, job submission (Batch and Array), job monitoring Running R and python sessions etc

What are the prerequisites?

Prior experience is not required.

What do I need?

You will need your own laptop to use.

How much does it cost?

The registration fee is $50. It is payable at the time of registration with credit card.

Where is the workshop?

It will be held on Blackboard-Collaborate platform, and will run from 9:00am to 12:00pm on the date indicated.

How do I apply?

All registration is "first-come, first-served." There is no application process. Sign up as soon as possible to ensure your place in the workshop.

Questions?

If you have any questions, please don’t hesitate to contact us at cbcsupport@uconn.edu