CBC UConn Health Workshop Registration
ISG CBC Event Schedule at Health Centre - 2023
Workshop: IPA Pathway Analysis
Dates: November 9, 2022
Time: 2pm - 4pm
Location: ARB large conference room
UConn Health
263 Farmington Ave.
Cost: Free
Registration Open link
IPA workshop : Learning Scope
Query, view and explore IPA’s library of >118,000 high quality datasets
Exploring public data and generating hypotheses without dataset
(ideal for Grant writing)
- Exploring how gene is expressed across different disease, cell type, tissue and other conditions
- Constructing networks and predicting activity changes in silico
- Searching for pre-analyzed public datasets / studies
Gaining biological insight through interpretation of your own datasets
- Data upload and analysis setup
- Interpreting key biological findings
- Comparing biological findings to public studies.
- Create your own networks starting from gene(s) and growing out to diseases or functions
- Predict the impact of changes that you make to a custom network or an established pathway
Project specific questions will be answered in the Q&A Session following the workshop.
Workshop: OpenRefine
Dates: March 7, 2023
Time: 9am- 11am
Location: Virtual
Cost: Free
Registration Open link
OpenRefine : A visual data cleaning and exploration of messy data
TSV, CSV, *SV, Excel (.xls and .xlsx), JSON, XML, RDF as XML, and Google Data documents are all supported
“A power tool for working with messy data”
Explore - Get to know your data better
Clean - Standardise the data entries and fix any inconsistency with faceting, clustering, cell transforms, GREL expressions…
Enrich - Enrich your data by combining datasets from online resources/databases
Transform - easily subset, change the format, split/merge columns effortlessly, transpose columns/rows…
Automate - Annotate, record, and preserve your processing routine for transparency, then automate its reuse....
A Tabular data case will be demonstrated.
AWESOME FOR CLEANING CLINICAL TABULAR DATA !!!
Workshop: Single-cell RNA-seq Data analysis
Dates: March 20-23, 2023
Time: 9am- 1pm (4 days)
Location: Virtual/InPerson*(UConn Health)
Cost: $350 (UConn Participants)
$483 (External Participants)
* Subject to participation strength from UConn Health.
Registration Open link
scRNA Data Analysis workshop : Learning Objective
Introduction to High performance computing Cluster. Brief introduction to Linux and R.
Introduction to different data file formats.
Understanding the Considerations while designing single-cell RNA-seq experiment
Hands on steps to convert raw single-cell RNA-seq data to a count or expression matrix
Compute and assess QC of the datasets
Clustering of Cells (UMAP, tSNE) and identify cluster specific markers and annotating cell types.
Perform integration of different sample conditions.
Perform trajectory analysis in cell differentiation.
Workshop: Circos Plots in R
Dates: April 4, 2023
Time: 9am- 11am
Location: Virtual
Cost: Free
Registration Open link
Circos plots in R
RCircos package provides a simple and flexible way to make Circos 2D track plots with R. It could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It can also serve as a base tool to generate complex Circos images.
There are three commonly used packages in R for Circos plots, and an introduction will be provided to all of them.
RCircos
circlize
BioCircos