News

Data Therapy(Friday, October 11th @ 10:30am) General consultation

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CBC Data Therapy Details!
Friday, October 11th at 10:30 am in ESB 304. General Consultation

Want to join us remotely, follow the link http://s.uconn.edu/esb304webex
Please join us with your questions!  

We welcome beginners and advanced users to generate a productive discussion!  

To get an idea of additional interests and needs – we have a very quick survey.  Our sessions are offered bi-weekly so join us again on  11th October

Looking forward to your questions and issues.

Data Therapy(Friday, September 27th @ 10:30am) General consultation

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CBC Data Therapy Details!

Friday, September 27th at 10:30 am in ESB 304. General Consultation

Want to join us remotely, follow the link http://s.uconn.edu/esb304webex
Please join us with your questions!  

We welcome beginners and advanced users to generate a productive discussion!  

To get an idea of additional interests and needs – we have a very quick survey.  Our sessions are offered bi-weekly so join us again on  11th October

Looking forward to your questions and issues.

Upcoming workshops

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CBC Workshops are open to advanced undergraduates, graduate students, postdocs, and faculty.  Each class enrolls a maximum of 12 students and provides hands-on training and background for genomics data analysis.  Two instructors are available to assist participants as they work through the provided exercises.  All materials, including sample and processed data files, are available after the course ends.  Workshops will be offered at the Storrs and UCH campuses.  Students are welcome to register and attend workshops at either location. We do not assume or require experience with high performance computing or programming.  The listed workshops still have spaces available, including the upcoming variant detection workshop!
 
 To register, please follow this link: https://bioinformatics.uconn.edu/cbc-workshops/
 
Variant Detection (Location: Storrs) – August 22-23, 2019
    HPC Introduction
    Experimental design considerations
    Read alignment
    SNP detection with GATK (GBS)
    SNP detection with Freebayes (exome capture)
    SNP detection with Samtools
    SNP annotation with SNPeff
 
Pathway Analysis (Location: Storrs) – November 21-22, 2019
    Gene Annotation with BLAST2GO/EnTAP
    Gene Enrichment Analysis with GOrilla, DAVID, GSEA
    Pathway Analysis with Cytoscape
    Pathway Analysis with IPA

Data Therapy(Friday, April 19th @ 10:30am) General consultation

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Friday, April 19 at 10:30 am in ESB 304.  General consultation/discussion.

Want to join us remotely, follow the link http://s.uconn.edu/esb304webex
Please join us with your questions!  

We welcome beginners and advanced users to generate a productive discussion!  

To get an idea of additional interests and needs – we have a very quick survey.  Our sessions are offered bi-weekly so join us again on  May 3rd.

Institute for Systems Genomics Networking and Tech Expo

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The Spring Institute for Systems Genomics Networking and Tech Expo will be held on Monday, May 13, 2019, from 9:00AM-3:00PM at the Grossman Auditorium, 400 Farmington Avenue, Farmington,
CT.  This day will feature brief updates by our core directors (Center for Genome Innovation, Computational Biology Core, Single Cell Genomics Facility), as well as from Microbial Analysis, Resources and Services and the Proteomics and Metabolomics Facility, followed by lunch and an optional tour of the Xanadu High Performance Computing resource and introduction to the BioRad Droplet Digital PCR.  The afternoon will feature bioinformatics and genomics technologies from Illumina, Oxford Nanopore, Qiagen IPA Software, and our very own HPC introduction. 

 

Tech Expo Sessions will include:

Session 1  (1-2pm): Illumina Office Hours OR HPC Introduction

Session 2 (2-3pm): ON OR IPA

 

Lunch will be provided.

 

If you plan to attend, please register at https://isg.uconn.edu/registration/ by May 1, 2019.  Please note that free shuttle service is provided between Storrs and UCH.

 

Thank you,

 

Rachel O’Neill

Director, Institute for Systems Genomics

 

Brent Graveley

Associate Director, Institute for Systems Genomics