CBC Workshops are open to advanced undergraduates, graduate students, postdocs, and faculty. Each class enrolls a maximum of 12 students and provides hands-on training and background for genomics data analysis. Two instructors are available to assist participants as they work through the provided exercises. All materials, including sample and processed data files, are available after the course ends. Workshops will be offered at the Storrs and UCH campuses. Students are welcome to register and attend workshops at either location. We do not assume or require experience with high performance computing or programming. The listed workshops still have spaces available, including the upcoming variant detection workshop!
To register, please follow this link: https://bioinformatics.uconn.edu/cbc-workshops/
Variant Detection (Location: Storrs) – August 22-23, 2019
HPC Introduction
Experimental design considerations
Read alignment
SNP detection with GATK (GBS)
SNP detection with Freebayes (exome capture)
SNP detection with Samtools
SNP annotation with SNPeff
Pathway Analysis (Location: Storrs) – November 21-22, 2019
Gene Annotation with BLAST2GO/EnTAP
Gene Enrichment Analysis with GOrilla, DAVID, GSEA
Pathway Analysis with Cytoscape
Pathway Analysis with IPA