Software installed on the clusters is available for public use without restriction. Users must be comfortable in a Unix environment and understand how to properly submit jobs.
This list is updated infrequently. For a list of the latest software/versions please log in to the Xanadu cluster and type “module avail” at the terminal prompt.
Request additional information, accounts, and software installs for Xanadu here.
Programming Tools and Libraries
| Software | Module |
| add_scores | module load add_scores/ |
| albacore | module load albacore/ |
| anaconda | module load anaconda/ |
| anaconda2 | module load anaconda2/ |
| anaconda3 | module load anaconda3/ |
| atlas | module load atlas/ |
| bedops | module load bedops/ |
| binutils | module load binutils/ |
| biopython/1.65 | module load biopython/
Python 3.6.3 |
| biopython/1.70 | module load biopython/
Python 2.7.14 |
| blas | module load blas/ |
| boost | module load boost/ |
| bwtool | module load bwtool/ |
| cairo | module load cairo/ |
| cmake | module load cmake/ |
| cuda | module load cuda/ |
| Cython | module load Cython/ |
| dcc_validateEncode | module load dcc_validateEncode/ |
| Doxygen | module load doxygen/ |
| eigen | module load eigen/ |
| emacs | module load emacs/ |
| emacs-C6 | module load emacs-C6/ |
| expat | module load expat/ |
| FFTW | module load FFTW/ |
| FIGlet | module load figlet/ |
| gcc | module load gcc/ |
| git | module load git/ |
| GNU Parallel | module load gnu-parallel/ |
| gnuplot | module load gnuplot/ |
| gperftools | module load gperftools/ |
| GSL | module load gsl/ |
| hdf5 | module load hdf5/ |
| htslib | module load htslib/ |
| IPython | module load ipython/ |
| JAGS | module load JAGS/ |
| java | module load java/ |
| java-sdk | module load java-sdk/ |
| julia | module load julia/ |
| kent-tools | module load kent-tools/ |
| lapack | module load lapack/ |
| libgfortran | module load libgfortran/ |
| libncurses | module load libncurses/ |
| libpng | module load libpng/ |
| libstdc++ | module load libstdc++/ |
| LIBSVM | module load libsvm/ |
| libxml2 | module load libxml2/ |
| libxslt | module load libxslt/ |
| lumpy-sv | module load lumpy-sv/ |
| Macaulay2 | module load Macaulay2/ |
| matlab | module load matlab/ |
| mawk | module load mawk/ |
| MCL | module load mcl/ |
| Miniconda | module load Miniconda/ |
| mpich | module load mpich/ |
| mpiexec | module load mpiexec/ |
| numpy | module load numpy/ |
| openmpi | module load openmpi/ |
| openssl | module load openssl/ |
| pandoc | module load pandoc/ |
| parallel | module load parallel/ |
| Perl | module load perl/ |
| pigz | module load pigz/ |
| Python | module load python/ |
| Python | module load python/ |
| Qt4-toolkit | module load Qt4-toolkit/ |
| R | module load R/ |
| ruby | module load ruby/ |
| scikit-learn | module load scikit-learn/ |
| scipy | module load scipy/ |
| scons | module load scons/ |
| scrapy | module load scrapy/ |
| simplejson | module load simplejson/ |
| singularity | module load singularity/ |
| sparsehash | module load sparsehash/ |
| squashfs | module load squashfs/ |
| squid | module load squid/ |
| stata | module load stata/ |
| swig | module load swig/ |
| tcl | module load tcl/ |
| TeX Live | module load texlive/ |
| texinfo | module load texinfo/ |
| tk | module load tk/ |
| toil | module load toil/ |
| zeromq | module load zeromq/ |
| zlib | module load zlib/ |