Programming Tools and Libraries

Software installed on the clusters is available for public use without restriction.  Users must be comfortable in a Unix environment and understand how to properly submit jobs.  The Xanadu cluster is replacing the BBC cluster for research use.  Request additional information, accounts, and software installs for Xanadu here.

Programming Tools and Libraries

Software Version module 
add_scores v1+A97:D179 module load add_scores/v1+A97:D179
albacore 2.3.1 module load albacore/2.3.1
anaconda 4.4.0 module load anaconda/4.4.0
anaconda2 4.4.0 module load anaconda2/4.4.0
anaconda3 4.1.1 module load anaconda3/4.1.1
atlas 3.10.2 module load atlas/3.10.2
bedops 2.4.2 module load bedops/2.4.2
binutils 2.27 module load binutils/2.27
biopython/1.65 1.65 module load biopython/1.65
biopython/1.70 1.70 module load biopython/1.70
blas 3.7.0 module load blas/3.7.0
boost 1.65.1 module load boost/1.65.1
bwtool 1.0 module load bwtool/1.0
cairo 1.15.5 module load cairo/1.15.5
cmake 3.5.2 module load cmake/3.5.2
cuda 9.0 module load cuda/9.0
Cython 0.25.2 module load Cython/0.25.2
dcc_validateEncode 1.8 module load dcc_validateEncode/1.8
Doxygen 1.8.7 module load doxygen/1.8.7
eigen 3.3.2 module load eigen/3.3.2
emacs 24.3 module load emacs/24.3
emacs-C6 25.1 module load emacs-C6/25.1
expat 2.2.0 module load expat/2.2.0
FFTW 3.3.6 module load FFTW/3.3.6
FIGlet 2.2.5 module load figlet/2.2.5
gcc 4.9.1 module load gcc/4.9.1
git 2.19.1 module load git/2.19.1
GNU Parallel 20160622 module load gnu-parallel/20160622
gnuplot 5.2.2 module load gnuplot/5.2.2
gperftools 2.5 module load gperftools/2.5
GSL 2.1 module load gsl/2.1
hdf5 1.8.14 module load hdf5/1.8.14
htslib 1.7 module load htslib/1.7
IPython 5.5.0 module load ipython/5.5.0
JAGS 4.3.0 module load JAGS/4.3.0
java 1.9.0.4 module load java/1.9.0.4
java-sdk 1.8.0_92 module load java-sdk/1.8.0_92
kent-tools 1.04.00 module load kent-tools/1.04.00
lapack 3.7.0 module load lapack/3.7.0
libgfortran 3.0.0 module load libgfortran/3.0.0
libncurses 4.0 module load libncurses/4.0
libpng 1.6.21 module load libpng/1.6.21
libstdc++ 6.0.13 module load libstdc++/6.0.13
LIBSVM 3.21 module load libsvm/3.21
libxml2 2.9.1 module load libxml2/2.9.1
libxslt 1.1.28 module load libxslt/1.1.28
lumpy-sv 0.2.13 module load lumpy-sv/0.2.13
Macaulay2 1.9.2-1 module load Macaulay2/1.9.2-1
matlab R2017b module load matlab/R2017b
mawk 1.3.4 module load mawk/1.3.4
MCL 14-137 module load mcl/14-137
Miniconda Miniconda3 module load Miniconda/Miniconda3
mpich 3.2 module load mpich/3.2
mpiexec 0.84_432 module load mpiexec/0.84_432
numpy 1.6.2 module load numpy/1.6.2
openmpi 3.0.0 module load openmpi/3.0.0
openssl 1.0.2 module load openssl/1.0.2
pandoc 2.1.3 module load pandoc/2.1.3
parallel 20180122 module load parallel/20180122
Perl 5.28.0 module load perl/5.28.0
pigz 2.2.3 module load pigz/2.2.3
Python 2.7.14 module load python/2.7.14
Python 3.6.3 module load python/3.6.3
Qt4-toolkit 5.11.1 module load Qt4-toolkit/5.11.1
ruby 2.5.0 module load ruby/2.5.0
scikit-learn 0.19.1 module load scikit-learn/0.19.1
scipy 1.0.0 module load scipy/1.0.0
scons 3.0.0 module load scons/3.0.0
scrapy 1.4.0 module load scrapy/1.4.0
simplejson 2.5.2 module load simplejson/2.5.2
singularity 2.5.0 module load singularity/2.5.0
sparsehash 2.0.3 module load sparsehash/2.0.3
squashfs 4.3 module load squashfs/4.3
squid 1.9 module load squid/1.9
stata 14 module load stata/14
swig 3.0.10 module load swig/3.0.10
tcl 8.5.12 module load tcl/8.5.12
TeX Live 2015 module load texlive/2015
texinfo 4.13 module load texinfo/4.13
tk 8.5.12 module load tk/8.5.12
zeromq 2.2.0 module load zeromq/2.2.0
zlib 1.2.11 module load zlib/1.2.11